How is Flow Cytometry Used in Biotechnology?

Flow cytometry is like a spotlight on the cellular stage, revealing the hidden intricacies of cells and chromosomes with remarkable clarity. It is a critical player in the world of biotechnology, allowing scientists to peer into the inner workings of cells, sorting and analyzing them with incredible precision.

Pipette adding fluid to one of several test tubes, medical abstract background.

Image Credit: motorolka/

Imagine being able to pick out a single voice in a bustling crowd; that is what flow cytometry does in a teeming sea of microscopic entities. It is not just a scientific technique but a gateway to understanding life at its most fundamental level, fuelling ground-breaking research and the creation of life-saving treatments.

Fundamentals of Flow Cytometry

At the heart of flow cytometry is its ability to provide a detailed view of complex cellular populations, an ability that rests on three foundational pillars: fluidics, optics, and detection systems. The fluidics system acts as the stage manager, organizing cells into a single-file parade that passes through the beam of a laser—this is the core of flow cytometry's functionality.

As each cell intersects the laser, it scatters light and emits fluorescence if tagged with fluorescent markers. These markers, specific to various cellular components or functions, are meticulously chosen to bind to different molecules of interest within or on the surface of the cells. The elegance of this process lies in its precision and the ability to analyze thousands of cells per second, resulting in detailed datasets that unravel the complexity of cellular heterogeneity.

Cell Cycle Analysis

Flow cytometry excels in cell cycle analysis. By employing fluorescent markers that bind to DNA, researchers can quantify the amount of DNA in each cell, thereby determining its position in the cell cycle.

The implications of this are vast, enabling a detailed understanding of cell proliferation rates and the synchronization of cell populations. This facet of flow cytometry is pivotal in cancer research and cytotoxicity studies, where the effect of drugs on the progression of the cell cycle is of paramount interest. It allows for the real-time assessment of how treatments can halt the cycle in cancer cells, an essential step in therapeutic evaluation.

Cell Sorting

The utility of flow cytometry is further magnified in cell sorting, where it acts as a discerning gatekeeper, selecting specific cell types from a mixed population. This sorting is achieved by using a variety of markers that identify unique cell surface proteins, allowing for the isolation of cells with specific functions or states. The sorter component of a flow cytometer can reroute cells into different containers, facilitating the collection of purified cell populations for downstream applications such as in vitro studies, transplantation, or therapeutic interventions.

Immune Cell Phenotyping

In immunology, flow cytometry provides a powerful means of decoding the immune system's complexity. It enables the phenotyping of immune cells by detecting multiple markers simultaneously, which is critical in identifying the various subsets of immune cells and their activation states. Such detailed profiling is invaluable in understanding pathogen-host interactions, autoimmunity, and the mechanisms of immune responses, contributing to the development of vaccines and immunotherapies.

Functional Assays

Beyond structural analysis, flow cytometry extends into functional assays, where it can measure changes within the cells in real-time. For instance, by using dyes sensitive to calcium ions or pH levels, scientists can monitor calcium signaling or intracellular pH fluctuations. Similarly, mitochondrial dyes can assess mitochondrial membrane potential, a key indicator of cellular health and metabolic status. These assays provide insights into the intricate workings of cellular machinery and how cells respond and adapt to their environment or external stimuli.

Stem Cell Research

In the dynamic world of stem cell research, flow cytometry is an essential tool. It zeroes in on and separates stem cells by detecting distinct surface markers or internal proteins. This precision enables scientists to refine stem cell groups for use in regenerative medicine. Such specificity is vital when crafting treatments for a range of health issues, including blood diseases and tissue repair. Flow cytometry offers a way to pinpoint the stem cells that hold the most promise for healing, ushering in a new era of targeted therapy development.

In each of these segments, flow cytometry stands out for its versatility and precision, offering a window into the cell's life at an unprecedented level of detail. This sophistication bridges multiple disciplines within biological research and also paves the way for innovations in medical treatments and diagnostics.

Commercial Relevance of Flow Cytometry in Biotechnology

Integrating flow cytometry into commercial applications has marked a revolutionary step in biopharmaceutical and agricultural sectors. This contribution extends from drug discovery to crop improvement, underlying its diverse potential and commercial viability.

Biopharmaceutical Applications

Flow cytometry has emerged as a pivotal tool for drug discovery and development within the biopharmaceutical industry. Its precise cell analysis capabilities are crucial in oncology, enabling the detailed study of cancer cells and the immune system's interactions with these cells. This detail is vital for the creation and validation of new cancer therapies. The technology's high-throughput nature also facilitates rapid drug screening, which can speed up the drug development process significantly.

Agricultural Biotechnology

Flow cytometry's influence extends beyond human health into agricultural advancements. It has become a key instrument in agricultural biotechnology for the development of GMOs and the enhancement of traditional plant breeding techniques. Through the detailed analysis of genetic material and cell properties, it supports the design of crops with improved yield, nutritional value, and resistance to environmental stresses. The speed and accuracy of flow cytometry facilitate the swift identification of desired genetic traits. This streamlines the breeding process and supports the global demand for sustainable food production.

Market Dynamics

The market for flow cytometry is in a state of dynamic growth, propelled by the technology's increasing applicability and the biotechnology sector's overall expansion. This trend is reflected in the rising investment in flow cytometry devices and reagents. However, the industry must navigate a series of challenges, including technological standardization and complex regulatory landscapes. Despite these hurdles, the opportunities, particularly those presented by advancements in artificial intelligence and the development of novel probes, are poised to further catalyze the market's growth.


Flow cytometry's versatility and expanding role in biotechnology are profound and multifaceted. This technology has become an indispensable tool in research and clinical applications. With advancements in AI and automation, flow cytometry is undergoing a renaissance, shifting from a purely analytical tool to an integrated platform capable of complex data processing and decision-making. The introduction of novel fluorescent probes is further refining its sensitivity and specificity, opening up new avenues for cellular analysis.


Mattanovich, D.& Borth, N. (2006). Applications of cell sorting in biotechnology. Microbial Cell Factories, 5(1), p.12.

Bonner, W.A., et al. (1972). Fluorescence Activated Cell Sorting. Review of Scientific Instruments, 43(3), pp.404–409.

Alfonso, B.-F. & Al-Rubeai, M. (2011). Flow Cytometry. Comprehensive Biotechnology, pp.559–578.

Sen, S., et al. (1990). Flow cytometric study of hybridoma cell culture: Correlation between cell surface fluorescence and IgG production rate. Enzyme and Microbial Technology, 12(8), pp.571–576.

Tawfik, D.S. & Griffiths, A.D. (1998). Man-made cell-like compartments for molecular evolution. Nature Biotechnology, 16(7), pp.652–656.

Roederer, M., et al. (1998). Flow Cytometry. Elsevier eBooks, pp.932–943.

Further Reading

Last Updated: Jan 9, 2024

Written by

Damilare Adedeji

Damilare is a seasoned content writer who brings stories to life with words. She has a knack for creating engaging and informative content tailored to diverse audiences. Whether it's a blog post, an article, or web content, Damilare's versatile writing style resonates with readers, driving meaningful engagement. She consistently deliver content that is both relevant and impactful. Outside of writing, Damilare enjoys playing chess and reading.


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