Researchers decipher the genome of Steller’s sea cow from fossil bones

During the Ice Age, giant mammals such as mammoths, sabre-toothed cats and woolly rhinoceroses once roamed Northern Europe and America. The cold oceans of the northern hemisphere were also home to giants like Steller’s sea cow, which grew up to eight metres long and weighed up to ten tonnes, and has been extinct for around 250 years.

Now an international research team has succeeded in deciphering the genome of this ice-age species from fossil bones. They also found an answer to the question of what the genome of this extinct species of sea cow reveals about present-day skin diseases.

The giant sea cow from the Ice Age was discovered in 1741 by Georg Wilhelm Steller and later named after him. The 18th-century naturalist was interested not only in the enormous size of this animal species but also in its unusual, bark-like skin. He described it as "a skin so thick that it is more like the bark of old oaks than the skin of an animal". Such a bark-like structure of the epidermis is not found in related sirenians, which today live exclusively in tropical waters. In scientific circles, it was previously assumed that the bark-like epidermis was the result of parasite feeding, but also insulated heat and thus protected the sea cow well from the cold during the Ice Age and from injuries in the polar seas.

In the current study, the scientists led by Dr Diana Le Duc and Professor Torsten Schöneberg from Leipzig University, Professor Michael Hofreiter from the University of Potsdam and Professor Beth Shapiro from the University of California, show that the palaeogenomes of Steller's sea cow reveal functional changes. These changes were responsible for the bark-like skin and the adaptation to cold.

To find this out, an international research team from Germany and the US reconstructed the genome of this extinct species from fossil bone remains of a total of twelve different individuals. "The most spectacular result of our investigations is that we have clarified why this giant of the sea had bark-like skin," said Diana Le Duc from the Institute of Human Genetics at Leipzig University Hospital. The scientists found inactivations of genes in the sea cow genome that are necessary for the normal structure of the outermost layer of the epidermis. These genes are also used in human skin.

Hereditary defects in these so-called lipoxygenase genes lead to what is known as ichthyosis in humans. This is characterized by a thickening and hardening of the top layer of skin with large scales, and is sometimes also known as 'fish scale disease'. The results of our research thus also sharpen our view of this clinical picture. Here may lie the key to new therapeutic approaches."

Professor Torsten Schöneberg, Rudolph Schönheimer Institute of Biochemistry

The scientists pinpointed the genetic defect by comparing the genome with that of the closest relative, the dugong. The researchers received support with their investigations from the Max Planck Institute for Evolutionary Anthropology in Leipzig, which contributed its bioinformatics expertise in the analysis of ancient DNA. As a result, they identified important evidence of genetic changes that may have contributed to adaptation to the cool North Pacific habitat. "This is an impressive example of how gene defects can not only cause disease, but also have advantages depending on the habitat," said Hofreiter from the University of Potsdam. Furthermore, the genome data revealed a dramatic reduction in population size. This began 500,000 years before the species was discovered and may have contributed to its extinction. Hofreiter summed it up as follows: "With today's molecular genetic clarification, our study closes the circle of an exact observation by a German naturalist in the early 18th century."

Source:
Journal reference:

Le Duc, D., et al. (2022) Genomic basis for skin phenotype and cold adaptation in the extinct Steller's sea cow. Science Advances. doi.org/10.1126/sciadv.abl6496.

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